v2.3 — BATCH ANALYSIS + LIVE PREVIEW

Split microscopy
images instantly.

Open ND2 and CZI files, split channels, adjust LUT, and export merged TIFF — no Fiji, no command line.

Buy Full Version — $9.99 Try Free (10 files)
Nikon ND2
+
Zeiss CZI
=
All Zeiss & Nikon Systems
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Free trial: 10 files  ·  $9.99 full version  ·  Unlimited files · XY Position split · Merged TIFF  ·  © MicroscopeXport

VERSIONS

Trial or Full Version?

The trial lets you explore all channel features. One $9.99 payment unlocks everything.

Feature Free Trial Full Version — $9.99
ND2 (Nikon) & CZI (Zeiss) support✓✓
Channel split (TIFF + color PNG)✓✓
Batch folder analysis✓✓
Live preview (LUT sliders)✓✓
LUT adjustment (Min / Max / Gamma)✓✓
Merged RGB PNG✓✓
Merged TIFF export✓✓
Z-stack max projection✓✓
Files limit10 filesUnlimited
XY Position splitting✗✓ Any number of positions
Separate folder per position✗✓
Free Download $9.99 — Buy Now
MicroscopeXport v2.1 — experiment_Zeiss.czi
⚠ Trial — 7 / 10 files left  |  XY Position locked  |  Full version: $9.99 Get License →
Format: CZI (Zeiss)  |  Channels: 4  |  XY Positions: 24  |  Z: 10  |  2048×2048 px
☐ XY Position Split 🔒 ☑ Channel Split ☑ Merged PNG ☑ Merged TIFF
■ CH01 – DAPI
Min
0
Max
45 200
Gamma
1.00
■ CH02 – GFP
Min
460
Max
55 600
Gamma
1.20
4 channels ready · experiment_Zeiss
▶ Process

FEATURES

Works with every Zeiss & Nikon.

🟢

Zeiss CZI Support

Opens .czi files from ZEN software. LSM 800/880/900, Axio, Observer — all Zeiss systems.

TRIAL + FULL
🔵

Nikon ND2 Support

NIS-Elements ND2 format. Ti2, A1, C2 — all Nikon confocals and widefield systems.

TRIAL + FULL
📁

Batch Analysis

Select an entire folder — all ND2 and CZI files load at once. Set LUT on one file, apply to all. Each file gets its own output folder named by channel colors.

TRIAL + FULL
👁

Live Preview

See your image in real time as you move the LUT sliders. Per-channel color preview and merged preview update instantly.

TRIAL + FULL
📍

XY Position Splitting

Any number of positions — 5, 50, 500 — each saved to its own folder. No limit in full version.

FULL VERSION
🎨

Channel Split + LUT

Independent min/max/gamma per channel. DAPI (405nm), GFP (488nm), CY3, CY5, AF series and more.

TRIAL + FULL
🖼

Merged PNG & TIFF

Combines all active channels into a single publication-quality RGB image. Exports both PNG and TIFF.

TRIAL + FULL
🔬

Z-Stack & Time-Series

Automatic max projection along Z axis. Time-series compresses all frames to a single image.

TRIAL + FULL

WORKFLOW

Done in three steps.

01

Open File

Select .nd2 or .czi. Channels, positions, Z and T are read automatically.

›
02

Adjust LUT

Set min/max/gamma and color profile per channel using sliders.

›
03

Process

All channels saved as TIFF + PNG, plus a merged TIFF and merged PNG per position.

# Output structure — Zeiss CZI, 24 positions, 4 channels (full version)
output/
 ├── experiment_Pos001/
 │   ├── experiment_Pos001_CH01.tif  # 16-bit raw
 │   ├── experiment_Pos001_CH01_DAPI.png
 │   ├── experiment_Pos001_CH02_GFP.png
 │   ├── experiment_Pos001_MERGED.tif  # merged TIFF
 │   └── experiment_Pos001_MERGED.png
 └── experiment_Pos002/ … Pos024/

LICENSE

How does activation work?

No server, no internet required. Works completely offline after activation.

1

Purchase

Pay $9.99 via Gumroad (credit card or PayPal). Enter your email address.

💳 VISA / MC 🅿 PayPal AMEX
2

Receive your key

Within a few hours, your unique 16-character license key arrives by email:

████ - ████ - ████ - ████  (your unique key)
3

Activate

Click "Get License" in the app, paste the key, and activate. Unlimited files and XY Position splitting are instantly unlocked.

Contact / License issues:

infomicroscopexport@gmail.com

INSTALLATION

No installation required. Just download and run.

WINDOWS EXE

Download the .exe file and double-click to run. No Python, no admin rights, no setup required. Works on any Windows 10/11 machine.

✓ No installation ✓ No admin rights needed ✓ No Python required ✓ Windows 10 / 11

⚠ WINDOWS SECURITY WARNING — FIRST RUN ONLY

Windows may show a "Windows protected your PC" message the first time you run the app. This is normal for new software without a paid certificate. The app is completely safe.

Step 1
Click "More info"
→
Step 2
Click "Run anyway"
→
Done!
App opens ✓

This warning appears only once. After the first run, the app opens directly without any warnings.

GET FULL VERSION

$9.99

one-time payment · unlimited files · lifetime updates

30-day money back guarantee ⚡ Instant license delivery 💳 PayPal · Card · AMEX


Buy on Gumroad (Card / PayPal) → ⬇ Download Free Trial (.exe)

WINDOWS 10/11 · PYTHON 3.9+ · NIKON ND2 + ZEISS CZI · MIT LICENSE